Transcript: lnc-SOX5-5:21

Basic information

LNCipedia transcript ID: lnc-SOX5-5:21 
LNCipedia gene ID: lnc-SOX5-5
Location (hg38): chr12:23603441-24562459
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2343 bp
Exons: 12
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000255864.1|FTMT24500058604.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 3407.636 coding 
CPAT coding probability 99.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SOX5-5:21 yes no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SOX5-5:21
5.0 lnc-SOX5-5:21
5.1 lnc-WBP11-68:19
5.2 lnc-SOX5-5:21