Transcript: lnc-SOX5-5:18

Basic information

LNCipedia transcript ID: lnc-SOX5-5:18 
LNCipedia gene ID: lnc-SOX5-5
Location (hg38): chr12:24213342-24562487
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 409 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000446891; ENST00000446891.2; RP11-444D3.1-006; OTTHUMT00000402439.1; NONHSAT027313; ENST00000446891.6
Alternative gene names: ENSG00000255864; RP11-444D3.1; ENSG00000255864.1; OTTHUMG00000169057.3; ENSG00000255864.5; AC069208.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.8517 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOX5-5:18 yes no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BCAT1-2:4
3.1 lnc-BCAT1-2:4
4.0 lnc-BCAT1-2:4
4.1 lnc-SOX5-5:18
5.0 lnc-SOX5-5:18
5.1 lnc-WBP11-68:18
5.2 lnc-SOX5-5:18