Transcript: lnc-GPR183-47:15

Basic information

LNCipedia transcript ID: lnc-GPR183-47:15 
LNCipedia gene ID: lnc-GPR183-47
RefSeq ID: NR_110731
Location (hg38): chr13:99486962-99499306
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1817 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110731; NR_110731.1
Alternative gene names: ; LINC01232


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.5308 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR183-47:15 yes no no no

Available literature

  1. Tong (2015), Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma., Mol. Cancer
  2. Li (2014), LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma., Gut


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPR183-2:5
4.0 LINC00449:3
4.1 LINC00449:3
5.0 LINC00449:3
5.1 lnc-IRS2-47:15
5.2 lnc-GPR183-47:15