Transcript: lnc-FOXO1-2:6

Basic information

LNCipedia transcript ID: lnc-FOXO1-2:6 
LNCipedia gene ID: lnc-FOXO1-2
Location (hg38): chr13:40347134-40481006
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3970 bp
Exons: 7
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT033329; NR_024507
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.0383 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXO1-2:6 yes no no no

Available literature

  1. Jeong (2016), Long noncoding RNA linc00598 regulates CCND2 transcription and modulates the G1 checkpoint., Sci Rep
  2. Qiao (2003), Identification of a novel fusion gene, TTL, fused to ETV6 in acute lymphoblastic leukemia with t(12;13)(p13;q14), and its implication in leukemogenesis., Leukemia


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXO1-2:6
4.0 lnc-FOXO1-2:6
4.1 lnc-FOXO1-2:6
5.0 lnc-FOXO1-2:6
5.1 lnc-CCDC169-53:6
5.2 lnc-FOXO1-2:6