Transcript: lnc-FOXO1-2:34

Basic information

LNCipedia transcript ID: lnc-FOXO1-2:34 
LNCipedia gene ID: lnc-FOXO1-2
RefSeq ID: NR_024507
Location (hg38): chr13:40347132-40481006
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3974 bp
Exons: 7
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_024507.2
Alternative gene names: LINC00598


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 19.0383 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXO1-2:34 yes no no no

Available literature

  1. Jeong (2016), Long noncoding RNA linc00598 regulates CCND2 transcription and modulates the G1 checkpoint., Sci Rep
  2. Qiao (2003), Identification of a novel fusion gene, TTL, fused to ETV6 in acute lymphoblastic leukemia with t(12;13)(p13;q14), and its implication in leukemogenesis., Leukemia


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-CCDC169-53:9
5.1 lnc-CCDC169-53:9
5.2 lnc-FOXO1-2:34