Transcript: lnc-FOXO1-2:2

Basic information

LNCipedia transcript ID: lnc-FOXO1-2:2 
LNCipedia gene ID: lnc-FOXO1-2
Location (hg38): chr13:40194600-40344113
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 253 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022255; NONHSAT033322
Alternative gene names: XLOC_010577; linc-LHFP


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -214.8544 non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXO1-2:2 no no no no

Available literature

  1. Jeong (2016), Long noncoding RNA linc00598 regulates CCND2 transcription and modulates the G1 checkpoint., Sci Rep
  2. Qiao (2003), Identification of a novel fusion gene, TTL, fused to ETV6 in acute lymphoblastic leukemia with t(12;13)(p13;q14), and its implication in leukemogenesis., Leukemia


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXO1-2:2
3.1 lnc-FOXO1-2:2
4.0 lnc-FOXO1-2:2
4.1 lnc-FOXO1-2:2
5.0 lnc-FOXO1-2:2
5.1 lnc-CCDC169-53:31
5.2 lnc-FOXO1-2:2