Transcript: lnc-BMP6-106:137

Basic information

LNCipedia transcript ID: lnc-BMP6-106:137 
LNCipedia gene ID: lnc-BMP6-106
Location (hg38): chr6:8906099-8931142
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5534 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011687; NONHSAT107649
Alternative gene names: XLOC_005160; linc-SLC35B3-BP


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.5206 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BMP6-106:137 no no no no

Available literature

  1. Lu (2016), Long non-coding RNA HULC promotes tumor angiogenesis in liver cancer by up-regulating sphingosine kinase 1 (SPHK1)., Oncotarget
  2. Wan (2016), miR-203 suppresses the proliferation and metastasis of hepatocellular carcinoma by targeting oncogene ADAM9 and oncogenic long non-coding RNA HULC., Anticancer Agents Med Chem
  3. Xie (2016), Long non-coding RNAs in colorectal cancer., Oncotarget
  4. Ching (2015), Non-coding yet non-trivial: a review on the computational genomics of lincRNAs., BioData Min
  5. Conigliaro (2015), CD90+ liver cancer cells modulate endothelial cell phenotype through the release of exosomes containing H19 lncRNA., Mol. Cancer
  6. Cui (2015), Long noncoding RNA HULC modulates abnormal lipid metabolism in hepatoma cells through an miR-9-mediated RXRA signaling pathway., Cancer Res.
  7. Cui (2015), A long noncoding RNA perturbs the circadian rhythm of hepatoma cells to facilitate hepatocarcinogenesis., Neoplasia
  8. Gandhy (2015), Specificity protein (Sp) transcription factors and metformin regulate expression of the long non-coding RNA HULC., Oncotarget
  9. Ge (2015), MiRNA-192 [corrected] and miRNA-204 Directly Suppress lncRNA HOTTIP and Interrupt GLS1-Mediated Glutaminolysis in Hepatocellular Carcinoma., PLoS Genet.
  10. Guerrieri (2015), Long non-coding RNAs era in liver cancer., World J Hepatol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BMP6-8:1
3.1 lnc-BMP6-8:2
4.0 lnc-BMP6-8:2
4.1 lnc-BMP6-8:2
5.0 lnc-BMP6-8:2
5.1 lnc-PRPF4B-106:137
5.2 lnc-BMP6-106:137

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