Transcript: TMEM161B-AS1:47

Basic information

LNCipedia transcript ID: TMEM161B-AS1:47 
LNCipedia gene ID: TMEM161B-AS1
RefSeq ID: NR_105020
Location (hg38): chr5:88392195-88436674
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 672 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_105020; NR_105020.1
Alternative gene names: linc-POLR3G-8; TMEM161B-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.2189 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TMEM161B-AS1:47 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
  2. Sun (2014), Computational evidence of NAGNAG alternative splicing in human large intergenic noncoding RNA., Biomed Res Int
  3. Cabili (2011), Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses., Genes Dev.
  4. Chodroff (2010), Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes., Genome Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASA1-3:46
4.0 TMEM161B-AS1:47
4.1 TMEM161B-AS1:47
5.0 TMEM161B-AS1:47
5.1 TMEM161B-AS1:47
5.2 TMEM161B-AS1:47