Transcript: TMEM161B-AS1:4

Basic information

LNCipedia transcript ID: TMEM161B-AS1:4 
LNCipedia gene ID: TMEM161B-AS1
Location (hg38): chr5:88268895-88271133
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 741 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00009444; ENST00000513011; ENST00000513011.1; TMEM161B-AS1-002; OTTHUMT00000370017.1; NONHSAT102612
Alternative gene names: XLOC_004456; linc-POLR3G-11; ENSG00000247828; CTC-358I24.1; ENSG00000247828.2; TMEM161B-AS1; OTTHUMG00000162704.3; linc-POLR3G-8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.5452 non-coding 
CPAT coding probability 4.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TMEM161B-AS1:4 yes no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
  2. Sun (2014), Computational evidence of NAGNAG alternative splicing in human large intergenic noncoding RNA., Biomed Res Int
  3. Cabili (2011), Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses., Genes Dev.
  4. Chodroff (2010), Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes., Genome Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RASA1-3:1
3.1 lnc-RASA1-3:1
4.0 TMEM161B-AS1:4
4.1 TMEM161B-AS1:4
5.0 TMEM161B-AS1:4
5.1 TMEM161B-AS1:4
5.2 TMEM161B-AS1:4