Transcript: PCBP1-AS1:9

Basic information

LNCipedia transcript ID: PCBP1-AS1:9 
LNCipedia gene ID: PCBP1-AS1
Location (hg38): chr2:69996803-70088554
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 542 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000452431.1; PCBP1-AS1-029; OTTHUMT00000329620.1; NONHSAT071395
Alternative gene names: ENSG00000179818.6; PCBP1-AS1; OTTHUMG00000153728.3; ENSG00000179818.9;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.2914 non-coding 
CPAT coding probability 3.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCBP1-AS1:9 yes no no no

Available literature

  1. Mo (2017), Identification and evaluation of lncRNA and mRNA integrative modules in human peripheral blood mononuclear cells., Epigenomics
  2. van Heesch (2014), Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes., Genome Biol.
  3. Derrien (2012), The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C2orf42-3:1
4.0 PCBP1-AS1:9
4.1 PCBP1-AS1:9
5.0 PCBP1-AS1:9
5.1 PCBP1-AS1:9
5.2 PCBP1-AS1:9