Transcript: PACRG-AS2:5

Basic information

LNCipedia transcript ID: PACRG-AS2:5 
HGNC Gene Symbol: PACRG-AS2    
HGNC Full Gene Name: PACRG antisense RNA 2
Ensembl Gene ID: ENSG00000225437
Ensembl Transcript ID: ENST00000440924
Location (hg38): chr6:163042557-163046685
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 457 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440924.1; RP1-257A15.1-001; OTTHUMT00000043007.1; NONHSAT115948; ENST00000440924.5
Alternative gene names: ENSG00000225437.1; RP1-257A15.1; OTTHUMG00000015973.1; ENSG00000225437.5; PACRG-AS2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.6991 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PACRG-AS2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL078585.1-1:3
4.0 PACRG-AS2:5
4.1 PACRG-AS2:5
5.0 PACRG-AS2:5
5.1 PACRG-AS2:5
5.2 PACRG-AS2:5