Transcript: LINC01089:5

Basic information

LNCipedia transcript ID: LINC01089:5 
HGNC Gene Symbol: LINC01089    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1089
Ensembl Gene ID: ENSG00000212694
Ensembl Transcript ID: ENST00000429892
RefSeq ID: NR_002809
Location (hg38): chr12:121795267-121803484
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1521 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000429892.1; AC084018.1-001; OTTHUMT00000250874.1; NONHSAT031447; NR_002809; ENST00000429892.5; NR_002809.2
Alternative gene names: ENSG00000212694.4; AC084018.1; OTTHUMG00000128905.2; ENSG00000212694.8; LINC01089; ; LIMT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.5303 non-coding 
CPAT coding probability 11.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01089:5 yes no no no

Available literature

  1. Sas-Chen (2016), LIMT is a novel metastasis inhibiting lncRNA suppressed by EGF and downregulated in aggressive breast cancer., EMBO Mol Med
  2. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  3. Zhi (2015), The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RHOF-1:2
4.0 LINC01089:5
4.1 LINC01089:5
5.0 LINC01089:5
5.1 LINC01089:5
5.2 LINC01089:5