Transcript: LINC01089:1

Basic information

LNCipedia transcript ID: LINC01089:1 
HGNC Gene Symbol: LINC01089    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1089
Ensembl Gene ID: ENSG00000212694
Ensembl Transcript ID: ENST00000538335
Location (hg38): chr12:121799849-121803906
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 630 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000538335.1; AC084018.1-004; OTTHUMT00000402181.1; NONHSAT031469
Alternative gene names: ENSG00000212694.4; AC084018.1; OTTHUMG00000128905.2; ENSG00000212694.8; LINC01089; ; LIMT

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.6448 non-coding 
CPAT coding probability 14.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01089:1 yes no no no

Available literature

  1. Sas-Chen (2016), LIMT is a novel metastasis inhibiting lncRNA suppressed by EGF and downregulated in aggressive breast cancer., EMBO Mol Med
  2. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  3. Zhi (2015), The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma., PLoS ONE

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RHOF-1:1
4.0 LINC01089:1
4.1 LINC01089:1
5.0 LINC01089:1
5.1 LINC01089:1
5.2 LINC01089:1