Transcript: CKMT2-AS1:31

Basic information

LNCipedia transcript ID: CKMT2-AS1:31 
LNCipedia gene ID: CKMT2-AS1
Location (hg38): chr5:81232306-81233842
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1537 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT102437
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.6618 non-coding 
CPAT coding probability 36.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CKMT2-AS1:31 yes no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACOT12-8:1
4.0 lnc-ACOT12-8:1
4.1 CKMT2-AS1:31
5.0 CKMT2-AS1:31
5.1 CKMT2-AS1:31
5.2 CKMT2-AS1:31