Transcript: CKMT2-AS1:12

Basic information

LNCipedia transcript ID: CKMT2-AS1:12 
LNCipedia gene ID: CKMT2-AS1
Location (hg38): chr5:81204096-81301485
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 560 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000503483.1; CTC-281B15.1-001; OTTHUMT00000369610.1; NONHSAT102433
Alternative gene names: ENSG00000247572.2; CTC-281B15.1; OTTHUMG00000162566.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -88.3634 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CKMT2-AS1:12 no no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACOT12-1:7
4.0 CKMT2-AS1:12
4.1 CKMT2-AS1:12
5.0 CKMT2-AS1:12
5.1 CKMT2-AS1:12
5.2 CKMT2-AS1:12