Transcript: lnc-ZUFSP-1:1

Basic information

LNCipedia transcript ID: lnc-ZUFSP-1:1 
LNCipedia gene ID: lnc-ZUFSP-1
Location (hg38): chr6:116596841-116616353
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 387 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012263; NONHSAT114655
Alternative gene names: XLOC_005816; linc-BET3L


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.7531 non-coding 
CPAT coding probability 3.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZUFSP-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZUFSP-1:1
3.1 lnc-ZUFSP-1:1
4.0 lnc-ZUFSP-1:1
4.1 lnc-ZUFSP-1:1
5.0 lnc-ZUFSP-1:1
5.1 lnc-HDAC2-32:1
5.2 lnc-ZUFSP-1:1