Transcript: lnc-ZSWIM6-8:1

Basic information

LNCipedia transcript ID: lnc-ZSWIM6-8:1 
LNCipedia gene ID: lnc-ZSWIM6-8
Ensembl Gene ID: ENSG00000248199
Ensembl Transcript ID: ENST00000511474
Location (hg38): chr5:61878109-61886129
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 454 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009409; ENST00000511474; ENST00000511474.1; CTD-2244C20.2-001; OTTHUMT00000368491.1; NONHSAT101696
Alternative gene names: XLOC_004406; linc-KIF2A-1; ENSG00000248199; CTD-2244C20.2; ENSG00000248199.1; OTTHUMG00000162296.1; AC026434.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -897.385 non-coding 
CPAT coding probability 11.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZSWIM6-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf64-2:1
3.1 lnc-C5orf64-2:1
4.0 lnc-C5orf64-2:1
4.1 lnc-C5orf64-2:1
5.0 lnc-C5orf64-2:1
5.1 lnc-GAPT-34:1
5.2 lnc-ZSWIM6-8:1