Transcript: lnc-ZSCAN30-5:6

Basic information

LNCipedia transcript ID: lnc-ZSCAN30-5:6 
LNCipedia gene ID: lnc-ZSCAN30-5
Ensembl Gene ID: ENSG00000278464
Ensembl Transcript ID: ENST00000619313
Location (hg38): chr18:34892013-34892535
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 523 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000619313.1
Alternative gene names: ENSG00000278464.1; RP11-96A15.1; AC068506.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -101.1939 non-coding 
CPAT coding probability 3.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZSCAN30-5:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ZSCAN30-5:6
4.1 lnc-ZSCAN30-5:6
5.0 lnc-ZSCAN30-5:6
5.1 lnc-SMAD2-102:6
5.2 lnc-ZSCAN30-5:6