Transcript: lnc-ZSCAN23-3:4

Basic information

LNCipedia transcript ID: lnc-ZSCAN23-3:4 
LNCipedia gene ID: lnc-ZSCAN23-3
Location (hg38): chr6:28448908-28489490
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1102 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000087927.1|MICT00000299936.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -4.6446 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZSCAN23-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ZSCAN23-3:4
5.0 lnc-ZSCAN23-3:4
5.1 lnc-SFTA2-70:2
5.2 lnc-ZSCAN23-3:4