Transcript: lnc-ZSCAN10-3:27

Basic information

LNCipedia transcript ID: lnc-ZSCAN10-3:27 
LNCipedia gene ID: lnc-ZSCAN10-3
Location (hg38): chr16:3110461-3115598
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1218 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000506353
Alternative gene names: ENSG00000249402; AC108134.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.7467 non-coding 
CPAT coding probability 7.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZSCAN10-3:27 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZSCAN10-1:1
3.1 lnc-ZSCAN10-2:1
4.0 lnc-ZSCAN10-3:27
4.1 lnc-ZSCAN10-3:27
5.0 lnc-ZSCAN10-3:27
5.1 lnc-PKMYT1-20:42
5.2 lnc-ZSCAN10-3:27