Transcript: lnc-ZPBP-4:1

Basic information

LNCipedia transcript ID: lnc-ZPBP-4:1 
LNCipedia gene ID: lnc-ZPBP-4
Ensembl Gene ID: ENSG00000235620
Ensembl Transcript ID: ENST00000440351
Location (hg38): chr7:50274790-50275622
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 360 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013169; ENST00000440351; ENST00000440351.1; AC020743.4-001; OTTHUMT00000342122.1; NONHSAT120549
Alternative gene names: XLOC_006440; linc-ZPBP-3; ENSG00000235620; AC020743.4; ENSG00000235620.1; OTTHUMG00000155881.1; AC020743.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -407.9214 non-coding 
CPAT coding probability 3.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZPBP-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZPBP-3:1
3.1 lnc-ZPBP-4:1
4.0 lnc-ZPBP-4:1
4.1 lnc-ZPBP-4:1
5.0 lnc-ZPBP-4:1
5.1 lnc-TNS3-36:1
5.2 lnc-ZPBP-4:1