Transcript: lnc-ZPBP-2:1

Basic information

LNCipedia transcript ID: lnc-ZPBP-2:1 
LNCipedia gene ID: lnc-ZPBP-2
Ensembl Gene ID: ENSG00000231681
Ensembl Transcript ID: ENST00000457592
Location (hg38): chr7:50202239-50204318
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 808 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013168; ENST00000457592; ENST00000457592.1; AC020743.3-001; OTTHUMT00000342123.1; NONHSAT120547
Alternative gene names: XLOC_006438; linc-ZPBP-2; ENSG00000231681; AC020743.3; ENSG00000231681.1; OTTHUMG00000155882.1; ENSG00000231681.2; AC020743.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.0475 non-coding 
CPAT coding probability 10.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZPBP-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZPBP-1:1
3.1 lnc-ZPBP-2:1
4.0 lnc-ZPBP-2:1
4.1 lnc-ZPBP-2:1
5.0 lnc-ZPBP-2:1
5.1 lnc-TNS3-35:2
5.2 lnc-ZPBP-2:1