Transcript: lnc-ZNHIT2-1:1

Basic information

LNCipedia transcript ID: lnc-ZNHIT2-1:1 
LNCipedia gene ID: lnc-ZNHIT2-1
Ensembl Gene ID: ENSG00000254501
Ensembl Transcript ID: ENST00000528887
Location (hg38): chr11:65110714-65111695
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 544 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528887.1; AP003068.9-001; OTTHUMT00000385232.1; NONHSAT022071
Alternative gene names: ENSG00000254501.1; AP003068.9; OTTHUMG00000165602.1; AP003068.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 461.5605 coding 
CPAT coding probability 95.24% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNHIT2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNHIT2-1:1
4.0 lnc-ZNHIT2-1:1
4.1 lnc-ZNHIT2-1:1
5.0 lnc-ZNHIT2-1:1
5.1 lnc-LTBP3-32:1
5.2 lnc-ZNHIT2-1:1