Transcript: lnc-ZNF706-4:1

Basic information

LNCipedia transcript ID: lnc-ZNF706-4:1 
LNCipedia gene ID: lnc-ZNF706-4
Ensembl Gene ID: ENSG00000253644
Ensembl Transcript ID: ENST00000518612
Location (hg38): chr8:101387299-101393186
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 408 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518612; ENST00000518612.1; KB-1930G5.3-001; OTTHUMT00000380525.1; NONHSAT128059; FPKM1_group_31892_transcript_1
Alternative gene names: ENSG00000253644; KB-1930G5.3; ENSG00000253644.1; OTTHUMG00000164831.1; AP001208.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.5617 non-coding 
CPAT coding probability 4.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF706-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF706-3:1
3.1 lnc-ZNF706-4:1
4.0 lnc-ZNF706-4:1
4.1 lnc-ZNF706-4:1
5.0 lnc-ZNF706-4:1
5.1 lnc-ZNF706-4:1
5.2 lnc-ZNF706-4:1