Transcript: lnc-ZNF705D-2:49

Basic information

LNCipedia transcript ID: lnc-ZNF705D-2:49 
LNCipedia gene ID: lnc-ZNF705D-2
Location (hg38): chr8:12436672-12441842
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1614 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014622; NONHSAT125146
Alternative gene names: XLOC_006721; linc-C8orf79-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 87.848 coding 
CPAT coding probability 5.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF705D-2:49 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF705D-2:1
3.1 lnc-ZNF705D-3:1
4.0 lnc-AC130352.1-2:25
4.1 lnc-AC130352.1-2:25
5.0 lnc-AC130352.1-2:25
5.1 lnc-DEFB106A-82:30
5.2 lnc-ZNF705D-2:49