Transcript: lnc-ZNF705D-2:42

Basic information

LNCipedia transcript ID: lnc-ZNF705D-2:42 
LNCipedia gene ID: lnc-ZNF705D-2
Location (hg38): chr8:12362018-12411001
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 776 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000433621; ENST00000433621.1; FAM66A-201; NONHSAT125134
Alternative gene names: ENSG00000227888; FAM66A; ENSG00000227888.2; OTTHUMG00000165458.1; ENSG00000227888.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 130.4645 coding 
CPAT coding probability 70.29% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF705D-2:42 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC130352.1-1:1
3.1 lnc-AC130352.1-1:1
4.0 lnc-AC130352.1-2:18
4.1 lnc-AC130352.1-2:18
5.0 lnc-AC130352.1-2:18
5.1 lnc-DEFB106A-82:23
5.2 lnc-ZNF705D-2:42