Transcript: lnc-ZNF683-1:1

Basic information

LNCipedia transcript ID: lnc-ZNF683-1:1 
LNCipedia gene ID: lnc-ZNF683-1
Ensembl Gene ID: ENSG00000225891
Ensembl Transcript ID: ENST00000423060
Location (hg38): chr1:26462756-26467282
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 529 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000423060.1; RP3-476K8.3-001; OTTHUMT00000009893.1; NONHSAT001813
Alternative gene names: ENSG00000225891.1; RP3-476K8.3; OTTHUMG00000003552.1; AL513365.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.952 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF683-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF683-1:1
4.0 lnc-ZNF683-1:1
4.1 lnc-ZNF683-1:1
5.0 lnc-ZNF683-1:1
5.1 lnc-ZNF683-1:1
5.2 lnc-ZNF683-1:1