Transcript: lnc-ZNF680-39:1

Basic information

LNCipedia transcript ID: lnc-ZNF680-39:1 
LNCipedia gene ID: lnc-ZNF680-39
RefSeq ID: NR_028349
Location (hg38): chr7:63396340-63399041
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 652 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT120917; NR_028349; NR_028349.1
Alternative gene names: LOC100287834


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.8492 non-coding 
CPAT coding probability 4.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF680-39:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF680-39:1
4.0 lnc-ZNF680-39:1
4.1 lnc-ZNF680-39:1
5.0 lnc-ZNF680-39:1
5.1 lnc-PSPH-49:3
5.2 lnc-ZNF680-39:1