Transcript: lnc-ZNF680-10:1

Basic information

LNCipedia transcript ID: lnc-ZNF680-10:1 
LNCipedia gene ID: lnc-ZNF680-10
Ensembl Gene ID: ENSG00000227148
Ensembl Transcript ID: ENST00000450891
Location (hg38): chr7:63044827-63054431
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 419 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013176; ENST00000450891; ENST00000450891.1; RP11-196D18.1-001; OTTHUMT00000343683.1; NONHSAT120888
Alternative gene names: XLOC_006463; linc-ZNF479-10; ENSG00000227148; RP11-196D18.1; ENSG00000227148.1; OTTHUMG00000156274.1; AC069285.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -206.2106 non-coding 
CPAT coding probability 8.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF680-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF680-8:1
3.1 lnc-ZNF680-10:1
4.0 lnc-ZNF680-10:1
4.1 lnc-ZNF680-10:1
5.0 lnc-ZNF680-10:1
5.1 lnc-PSPH-38:1
5.2 lnc-ZNF680-10:1