Transcript: lnc-ZNF672-1:1

Basic information

LNCipedia transcript ID: lnc-ZNF672-1:1 
LNCipedia gene ID: lnc-ZNF672-1
Ensembl Gene ID: ENSG00000227237
Ensembl Transcript ID: ENST00000417047
Location (hg38): chr1:248859164-248864796
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 462 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000435; ENST00000417047.1; AL672294.1-001; OTTHUMT00000097321.1; NONHSAT010840
Alternative gene names: XLOC_000653; linc-PGBD2; ENSG00000227237.1; AL672294.1; OTTHUMG00000040425.1; AL672291.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -244.3594 non-coding 
CPAT coding probability 2.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF672-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF672-1:1
3.1 lnc-ZNF672-1:1
4.0 lnc-ZNF672-1:1
4.1 lnc-ZNF672-1:1
5.0 lnc-ZNF672-1:1
5.1 lnc-TRIM58-11:1
5.2 lnc-ZNF672-1:1