Transcript: lnc-ZNF574-1:2

Basic information

LNCipedia transcript ID: lnc-ZNF574-1:2 
LNCipedia gene ID: lnc-ZNF574-1
Ensembl Gene ID: ENSG00000254887
Ensembl Transcript ID: ENST00000531517
Location (hg38): chr19:42134504-42137087
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 554 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531517.1; CTC-378H22.1-002; OTTHUMT00000387342.1; NONHSAT066521
Alternative gene names: ENSG00000254887.1; CTC-378H22.1; OTTHUMG00000165992.1; AC010247.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.0056 non-coding 
CPAT coding probability 4.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF574-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF574-1:2
4.0 lnc-ZNF574-1:2
4.1 lnc-ZNF574-1:2
5.0 lnc-ZNF574-1:2
5.1 lnc-SHKBP1-37:8
5.2 lnc-ZNF574-1:2