Transcript: lnc-ZNF517-4:1

Basic information

LNCipedia transcript ID: lnc-ZNF517-4:1 
LNCipedia gene ID: lnc-ZNF517-4
Ensembl Gene ID: ENSG00000263612
Ensembl Transcript ID: ENST00000583427
Location (hg38): chr8:144713899-144714845
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 947 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583427.1; AF186192.6-001; OTTHUMT00000447155.1; NONHSAT129829
Alternative gene names: ENSG00000263612.1; AF186192.6; OTTHUMG00000179572.1; AF186192.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 58.6856 non-coding 
CPAT coding probability 45.21% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF517-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AF186192.2.1-1:1
4.0 lnc-AF186192.2.1-1:1
4.1 lnc-AF186192.2.1-1:1
5.0 lnc-AF186192.2.1-1:1
5.1 lnc-GPT-17:1
5.2 lnc-ZNF517-4:1