Transcript: lnc-ZNF516-4:9

Basic information

LNCipedia transcript ID: lnc-ZNF516-4:9 
LNCipedia gene ID: lnc-ZNF516-4
Ensembl Gene ID: ENSG00000265717
Ensembl Transcript ID: ENST00000579714
Location (hg38): chr18:76254292-76255214
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 598 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579714.1; RP11-94B19.7-001; OTTHUMT00000444929.1; NONHSAT059923
Alternative gene names: ENSG00000265717.1; RP11-94B19.7; OTTHUMG00000179135.1; AC103808.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.3441 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF516-4:9 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF516-1:1
4.0 lnc-ZNF516-1:1
4.1 lnc-ZNF516-4:9
5.0 lnc-ZNF516-4:9
5.1 lnc-PQLC1-32:6
5.2 lnc-ZNF516-4:9