Transcript: lnc-ZNF516-4:1

Basic information

LNCipedia transcript ID: lnc-ZNF516-4:1 
LNCipedia gene ID: lnc-ZNF516-4
Location (hg38): chr18:76224444-76246742
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 619 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026572; NONHSAT059916
Alternative gene names: XLOC_012891; linc-C18orf62-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.1582 non-coding 
CPAT coding probability 3.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF516-4:1 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF516-2:1
3.1 lnc-ZNF516-4:1
4.0 lnc-ZNF516-4:1
4.1 lnc-ZNF516-4:1
5.0 lnc-ZNF516-4:1
5.1 lnc-PQLC1-32:8
5.2 lnc-ZNF516-4:1