Transcript: lnc-ZNF479-23:3

Basic information

LNCipedia transcript ID: lnc-ZNF479-23:3 
LNCipedia gene ID: lnc-ZNF479-23
Ensembl Gene ID: ENSG00000279072
Ensembl Transcript ID: ENST00000623699
Location (hg38): chr7:56817022-56817864
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 648 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623699.1
Alternative gene names: ENSG00000279072.1; RP13-580B18.4; AC118758.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 220.0854 coding 
CPAT coding probability 95.11% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF479-23:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ZNF479-18:4
4.1 lnc-ZNF479-18:4
5.0 lnc-ZNF479-18:4
5.1 lnc-PSPH-23:3
5.2 lnc-ZNF479-23:3