Transcript: lnc-ZNF454-1:1

Basic information

LNCipedia transcript ID: lnc-ZNF454-1:1 
LNCipedia gene ID: lnc-ZNF454-1
Ensembl Gene ID: ENSG00000254035
Ensembl Transcript ID: ENST00000519491
Location (hg38): chr5:178969390-178990116
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 674 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519491.1; RP11-281O15.4-001; OTTHUMT00000374376.1; NONHSAT105567
Alternative gene names: ENSG00000254035.1; RP11-281O15.4; OTTHUMG00000163579.1; AC104117.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.7211 non-coding 
CPAT coding probability 26.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF454-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF454-1:1
4.0 lnc-ZNF454-1:1
4.1 lnc-ZNF454-1:1
5.0 lnc-ZNF454-1:1
5.1 lnc-MAML1-12:1
5.2 lnc-ZNF454-1:1