Transcript: lnc-ZNF404-1:1

Basic information

LNCipedia transcript ID: lnc-ZNF404-1:1 
LNCipedia gene ID: lnc-ZNF404-1
Location (hg38): chr19:43883819-43901842
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1118 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00027367; NONHSAT066638
Alternative gene names: XLOC_013350; linc-ZNF404


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.2666 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF404-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF45-1:1
3.1 lnc-ZNF404-1:1
4.0 lnc-ZNF404-1:1
4.1 lnc-ZNF404-1:1
5.0 lnc-ZNF404-1:1
5.1 lnc-GPR4-41:1
5.2 lnc-ZNF404-1:1