Transcript: lnc-ZNF322-1:1

Basic information

LNCipedia transcript ID: lnc-ZNF322-1:1 
LNCipedia gene ID: lnc-ZNF322-1
Location (hg38): chr6:26634383-26636780
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 530 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000456172.1; RP11-457M11.2-001; OTTHUMT00000040125.1; NONHSAT108303
Alternative gene names: ENSG00000233631.1; RP11-457M11.2; OTTHUMG00000014459.1; ENSG00000233631.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.2878 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF322-1:1 yes no no no

Available literature

  1. Shao (2015), Identification of module biomarkers from the dysregulated ceRNA-ceRNA interaction network in lung adenocarcinoma., Mol Biosyst


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF322-1:1
4.0 lnc-ZNF322-1:1
4.1 lnc-ZNF322-1:1
5.0 lnc-ZNF322-1:1
5.1 lnc-C6orf62-50:1
5.2 lnc-ZNF322-1:1