Transcript: lnc-ZNF32-2:2

Basic information

LNCipedia transcript ID: lnc-ZNF32-2:2 
LNCipedia gene ID: lnc-ZNF32-2
Ensembl Gene ID: ENSG00000234973
Ensembl Transcript ID: ENST00000419406
RefSeq ID: NR_134484
Location (hg38): chr10:43777562-43778825
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 408 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017960; ENST00000419406; ENST00000419406.1; RP11-272J7.4-001; OTTHUMT00000047729.1; NR_134484.1
Alternative gene names: XLOC_008791; linc-ZNF32-2; ENSG00000234973; RP11-272J7.4; ENSG00000234973.1; OTTHUMG00000018047.1; ENSG00000234973.5; AL355989.1; LOC102724264


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.6447 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF32-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF32-2:2
3.1 lnc-ZNF32-2:2
4.0 lnc-ZNF32-2:2
4.1 lnc-ZNF32-2:2
5.0 lnc-ZNF32-2:2
5.1 lnc-LRRC18-89:4
5.2 lnc-ZNF32-2:2