Transcript: lnc-ZIC4-3:1

Basic information

LNCipedia transcript ID: lnc-ZIC4-3:1 
LNCipedia gene ID: lnc-ZIC4-3
Ensembl Gene ID: ENSG00000243620
Ensembl Transcript ID: ENST00000473299
Location (hg38): chr3:146909685-147370656
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 570 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000473299.1; RP11-649A16.1-001; OTTHUMT00000355522.1; NONHSAT092568
Alternative gene names: ENSG00000243620.1; RP11-649A16.1; OTTHUMG00000159458.1; AC092957.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.2597 non-coding 
CPAT coding probability 1.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZIC4-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZIC4-3:1
4.0 lnc-ZIC4-3:1
4.1 lnc-ZIC4-3:1
5.0 lnc-ZIC4-3:1
5.1 lnc-PLSCR5-15:1
5.2 lnc-ZIC4-3:1