Transcript: lnc-ZIC1-22:2

Basic information

LNCipedia transcript ID: lnc-ZIC1-22:2 
LNCipedia gene ID: lnc-ZIC1-22
Ensembl Gene ID: ENSG00000244358
Ensembl Transcript ID: ENST00000482351
Location (hg38): chr3:145939968-145957831
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 624 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005605; ENST00000482351; ENST00000482351.1; RP11-88H10.2-002; OTTHUMT00000355091.1; NONHSAT092542
Alternative gene names: XLOC_002852; linc-ZIC1-5; ENSG00000244358; RP11-88H10.2; ENSG00000244358.1; OTTHUMG00000159391.1; AC055758.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -172.1317 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZIC1-22:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC107021.1-2:2
3.1 lnc-AC107021.1-3:2
4.0 lnc-AC107021.1-3:2
4.1 lnc-AC107021.1-3:2
5.0 lnc-AC107021.1-3:2
5.1 lnc-ZIC1-12:2
5.2 lnc-ZIC1-22:2