Transcript: lnc-ZFYVE1-1:3

Basic information

LNCipedia transcript ID: lnc-ZFYVE1-1:3 
LNCipedia gene ID: lnc-ZFYVE1-1
Ensembl Gene ID: ENSG00000258813
Ensembl Transcript ID: ENST00000554737
Location (hg38): chr14:73057925-73059415
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1000 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554737.2
Alternative gene names: ENSG00000258813.2; RP11-109N23.4; AL442663.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -150.2157 non-coding 
CPAT coding probability 4.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZFYVE1-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ZFYVE1-1:3
4.1 lnc-ZFYVE1-1:3
5.0 lnc-ZFYVE1-1:3
5.1 lnc-ABCD4-28:2
5.2 lnc-ZFYVE1-1:3