Transcript: lnc-ZFP64-5:1

Basic information

LNCipedia transcript ID: lnc-ZFP64-5:1 
LNCipedia gene ID: lnc-ZFP64-5
Ensembl Gene ID: ENSG00000232286
Ensembl Transcript ID: ENST00000426963
Location (hg38): chr20:52858338-52862855
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 459 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028067; ENST00000426963; ENST00000426963.1; RP11-80K6.2-001; OTTHUMT00000080493.2; NONHSAT080383
Alternative gene names: XLOC_013799; linc-ZFP64-1; ENSG00000232286; RP11-80K6.2; ENSG00000232286.1; OTTHUMG00000033074.2; AL121902.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -270.3217 non-coding 
CPAT coding probability 3.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZFP64-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZFP64-5:1
3.1 lnc-ZFP64-5:1
4.0 lnc-ZFP64-5:1
4.1 lnc-ZFP64-5:1
5.0 lnc-ZFP64-5:1
5.1 lnc-SPATA2-47:1
5.2 lnc-ZFP64-5:1