Transcript: lnc-ZFP64-3:1

Basic information

LNCipedia transcript ID: lnc-ZFP64-3:1 
LNCipedia gene ID: lnc-ZFP64-3
Ensembl Gene ID: ENSG00000232465
Ensembl Transcript ID: ENST00000416237
Location (hg38): chr20:52487922-52500591
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 573 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028066; ENST00000416237; ENST00000416237.1; RP5-1022J11.2-001; OTTHUMT00000259124.1; NONHSAT080366
Alternative gene names: XLOC_013797; linc-ZFP64-3; ENSG00000232465; RP5-1022J11.2; ENSG00000232465.1; OTTHUMG00000134296.1; AL049765.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -124.0091 non-coding 
CPAT coding probability 3.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZFP64-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZFP64-3:1
3.1 lnc-ZFP64-3:1
4.0 lnc-ZFP64-3:1
4.1 lnc-ZFP64-3:1
5.0 lnc-ZFP64-3:1
5.1 lnc-SPATA2-45:1
5.2 lnc-ZFP64-3:1