Transcript: lnc-ZFP62-1:1

Basic information

LNCipedia transcript ID: lnc-ZFP62-1:1 
LNCipedia gene ID: lnc-ZFP62-1
Location (hg38): chr5:180834303-180835712
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 953 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011109; NONHSAT105844
Alternative gene names: XLOC_005111; linc-MGAT1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.2194 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZFP62-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZFP62-1:1
3.1 lnc-ZFP62-1:1
4.0 lnc-ZFP62-1:1
4.1 lnc-ZFP62-1:1
5.0 lnc-ZFP62-1:1
5.1 lnc-OR2Y1-6:1
5.2 lnc-ZFP62-1:1