Transcript: lnc-ZFHX3-27:11

Basic information

LNCipedia transcript ID: lnc-ZFHX3-27:11 
LNCipedia gene ID: lnc-ZFHX3-27
Ensembl Gene ID: ENSG00000261404
Ensembl Transcript ID: ENST00000568137
RefSeq ID: NR_104657
Location (hg38): chr16:74192392-74215521
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 966 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000510251; TCONS_00024274; ENST00000568137.1; AC009120.4-001; OTTHUMT00000431686.1; NONHSAT143655; NR_104657; NR_104657.1
Alternative gene names: ENSG00000249447; XLOC_012007; linc-ZFHX3-2; ENSG00000261404.1; AC009120.4; OTTHUMG00000176255.2; ENSG00000261404.5; ENSG00000261404.6; AC138627.1; LOC101928035


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.8679 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZFHX3-27:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLEC18B-2:3
3.1 lnc-CLEC18B-3:5
4.0 lnc-CLEC18B-3:5
4.1 lnc-CLEC18B-3:5
5.0 lnc-CLEC18B-3:5
5.1 lnc-MLKL-27:11
5.2 lnc-ZFHX3-27:11