Transcript: lnc-ZCCHC7-2:2

Basic information

LNCipedia transcript ID: lnc-ZCCHC7-2:2 
LNCipedia gene ID: lnc-ZCCHC7-2
Ensembl Gene ID: ENSG00000281649
Ensembl Transcript ID: ENST00000625218
Location (hg38): chr9:37079935-37086874
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 311 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430809; ENST00000430809.1; RP11-220I1.1-002; OTTHUMT00000052437.1; NONHSAT131041; ENST00000625218.1
Alternative gene names: ENSG00000233137; RP11-220I1.1; ENSG00000233137.1; OTTHUMG00000019910.1; ENSG00000233137.2; ENSG00000281649.1; EBLN3; EBLN3P


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 14.6 non-coding 
CPAT coding probability 7.74% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.2
orfFrame6.587356293
seqAAMEEPMDTSEPLSALPFTGQQSFEPSGKFGQYPSMQMNHIQALGKWRT

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZCCHC7-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZCCHC7-2:2
3.1 lnc-ZCCHC7-2:2
4.0 lnc-ZCCHC7-2:2
4.1 lnc-ZCCHC7-2:2
5.0 lnc-ZCCHC7-2:2
5.1 lnc-GRHPR-11:20
5.2 lnc-ZCCHC7-2:2