Transcript: lnc-ZBED2-2:1

Basic information

LNCipedia transcript ID: lnc-ZBED2-2:1 
LNCipedia gene ID: lnc-ZBED2-2
Ensembl Gene ID: ENSG00000239311
Ensembl Transcript ID: ENST00000497896
Location (hg38): chr3:111466313-111497095
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 411 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000497896; ENST00000497896.1; RP11-615J4.3-001; OTTHUMT00000354056.1; NONHSAT091145
Alternative gene names: ENSG00000239311; RP11-615J4.3; ENSG00000239311.1; OTTHUMG00000159241.1; AC092916.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -304.0829 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZBED2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZBED2-1:1
3.1 lnc-ZBED2-2:1
4.0 lnc-ZBED2-2:1
4.1 lnc-ZBED2-2:1
5.0 lnc-ZBED2-2:1
5.1 lnc-NEPRO-39:1
5.2 lnc-ZBED2-2:1