Transcript: lnc-YTHDF3-7:1

Basic information

LNCipedia transcript ID: lnc-YTHDF3-7:1 
LNCipedia gene ID: lnc-YTHDF3-7
Ensembl Gene ID: ENSG00000253894
Ensembl Transcript ID: ENST00000518739
RefSeq ID: NR_125825
Location (hg38): chr8:63465849-63475482
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3222 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000518739; ENST00000518739.1; RP11-45K10.2-001; OTTHUMT00000378596.1; NONHSAT126940; NR_125825; NR_125825.1
Alternative gene names: ENSG00000253894; RP11-45K10.2; ENSG00000253894.1; OTTHUMG00000164396.1; AC011124.2; LOC102724612


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -124.7283 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-YTHDF3-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NKAIN3-5:1
3.1 lnc-NKAIN3-7:1
4.0 lnc-NKAIN3-7:1
4.1 lnc-NKAIN3-7:1
5.0 lnc-NKAIN3-7:1
5.1 lnc-SGK3-33:1
5.2 lnc-YTHDF3-7:1