Transcript: lnc-YTHDF1-5:1

Basic information

LNCipedia transcript ID: lnc-YTHDF1-5:1 
LNCipedia gene ID: lnc-YTHDF1-5
Location (hg38): chr20:63244072-63249266
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 663 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT080844
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.0395 non-coding 
CPAT coding probability 22.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-YTHDF1-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-YTHDF1-5:1
4.0 lnc-YTHDF1-5:1
4.1 lnc-YTHDF1-5:1
5.0 lnc-YTHDF1-5:1
5.1 lnc-SPATA2-187:1
5.2 lnc-YTHDF1-5:1